Drexel CoAS talks mp3 podcast

Jean-Claude Bradley presented on Open Notebook Science at the NIST Social Media Day on December 11, 2008. The talks starts with an overview of ONS and how it is being used to assess solubility measurements being crowdsourced in the ONS Challenge and Submeta Awards. The use of wikis, blogs, Google Spreadsheets, YouTube, Flickr, ChemSpider and other free hosted Web2.0 tools is highlighted. The UsefulChem project, involving the synthesis of anti-malarial agents, is then briefly covered. Finally, a very recent application of using Google Spreadsheets to automatically call web services to calculate volumes and weights of chemicals needed in reactions is demonstrated (code by Rajarshi Guha). audio (mp3) screencast presentation NIST Dec08 Open Notebook Science TalkView SlideShare presentation or Upload your own. (tags: open notebook)

update: transcript is available On October 10, 2008 Jean-Claude Bradley presented a 15 minute summary of Open Notebook Science and its application to the synthesis of anti-malarial compounds as part of a mini-symposium on faculty research in the Chemistry department at Drexel University. Audio podcast (mp3) GoogleVideo Slideshare Open Notebook Science in 15 minutesView SlideShare presentation or Upload your own. (tags: open notebook)

Update: transcript available This talk was presented by Jean-Claude Bradley at the American Chemical Society meeting in Philadelphia on August 18, 2008. This is an overview of how social media and Second Life can be used to productively network. Prominent recent examples involving Deepak Singh, Bora Zivkovic, Beth Ritter-Guth and others are highlighted. Then Second Life content that enables collaboration, especially in chemistry, is detailed. The presentation ends with an example of hyper-networking using FriendFeed followed by a few words from Andrew Lang from ORU and Sandy Adam from Sigma-Aldrich. audio (mp3) GoogleVideo screencast Second Life and Social Media: Networking Gold Mine or Time Sink?View SlideShare presentation or Upload your own. (tags: second life)

update: transcript available This talk covers Open Notebook Science from an information technology perspective. It was presented by Jean-Claude Bradley at the Drexel iSchool on November 11, 2008. Although solubility measurements and chemical reactions are mentioned the focus is more on how information is stored, retrieved and used using free and hosted services such as Blogger, GoogleDocs, Wikispaces, ChemSpider, CDD and others. The UsefulChem project and the Open Notebook Science Challenge are highlighted. audio (mp3) screencast slides iSchool Open Notebook Science TalkView SlideShare presentation or Upload your own. (tags: open notebook)

This is a co-presentation by Jean-Claude Bradley and Andrew Lang on August 18, 2008 at the American Chemical Society conference in Philadelphia. The focus is on many of the tools available to easily demonstrate chemistry concepts in Second Life such as 3D molecules, reaction mechanisms, docking, organic chemistry quizzes, 5D graphs, the ACS museum featuring an HIV exhibit, the red tide phenomenon and many others. Most of the content on display rests on ACS island, Drexel Island and Nature's Second Nature island in Second Life. audio (mp3) Google Video screencast Bradley-Lang Chemistry in Second LifeView SlideShare presentation or Upload your own. (tags: life second)

This talk was presented by Jean-Claude Bradley at the American Chemical Society meeting in Philadelphia on August 20, 2008. An introduction to Open Notebook Science is presented followed by an illustration of how ONS can be used in drug discovery. New data relating to the anti-malarial activity of Ugi products on 2 falcipain-2 docking sites is detailed. The docking calculations were provided by Rajarshi Guha and the enzyme and in vitro assays on Plasmodium falciparum were provided by Phil Rosenthal and Jiri Gut. Most of the syntheses were carried out by Khalid Mirza in the Bradley group. audio (mp3) Google Video screencast Open Notebook Science and Preliminary Falcipain-2 ResultsView SlideShare presentation or Upload your own. (tags: reaction ugi)

Update: transcript now available This is a presentation by Jean-Claude Bradley at the Biennial Conference for Chemical Education (BCCE) on July 29, 2008. The talk starts with an overview of Open Notebook Science using a wiki as a public lab notebook. An example of the usefulness of publishing failed experiments is detailed, showing how the version history of the wiki can be used to track the evolution of an organic chemistry experiment. Near the end of the talk an example of using automation to optimize a Ugi reaction is mentioned. audio (mp3) Powerpoint Screencast (Google Video, YouTube part 1, part 2, part 3) Open Notebook Science BCCE 2008view presentation (tags: automation laboratory open notebook)

I talked about Second Life in the chemistry classroom at the Chemical Heritage Foundation on April 29, 2008. This was part of the 8th Annual Leadership Initiative in Science Education (LISE 8). Most examples involve work done in collaboration with Andrew Lang. At the end I invite the group to an in-world meeting on May 6, 2008 at 13:30 EDT on ACS island. (slurl) audio mp3 Powerpoint Google video screencast transcript

I present at the American Chemical Society meeting in New Orleans on April 6, 2008. The use cheminformatics tools such as SMILES, InChI, InChIKeys and JCAMP-DX to store and retrieve experimental information on a public laboratory notebook is detailed. audio (mp3) Powerpoint screencast (Google Video) transcript

I present on using Second Life to teach chemistry at the American Chemical Society meeting in New Orleans April 7, 2008. Examples include using quizzes, generating 3D molecules, visualizing docking, proteins and reactions. An overview of ACS island is also given, with a focus on the Sci-Mix virtual poster session. Much of this work was done in collaboration with Andrew Lang. audio (mp3) Powerpoint screencast (Google Video) transcript

Here is my talk at Albright College on March 17, 2008. I mainly discussed the evolution in my use of blogs, wikis and Second Life in the teaching of undergraduate organic chemistry courses. audio (mp3) Powerpoint screencast transcript

I presented a talk about Open Notebook Science and the implications for the future of libraries for Heather Morrison's class at the School of Libraries at the University of British Columbia on April 2, 2008. We did this over Skype so the questions are not very clear in the audio. audio (mp3) Powerpoint Screencast (Google Video)

I guest lectured on Rajarshi Guha's cheminformatics course at Indiana University on March 25, 2008. After an introduction to Open Notebook Science and the synthesis of anti-malarial compounds, I discuss SMILES, InChIs, InChIKeys, CMLRSS, JCAMP-DX, JSpecView, ExcelVBA, blogs, wikis and Second Life. audio (mp3) Powerpoint Screencast on SciVee transcript

Jean-Claude Bradley presents on "Open Notebook Science: Putting the Information User in Control through Transparency" at the NFAIS meeting in Philadelphia on February 24, 2008. This was part of the session on "The Emerging Culture of the New Information Order". The use of public blogs, wikis, GoogleDocs and mailing lists to conduct research on the synthesis of new anti-malarial agents is described. Audio (mp3) Powerpoint Screencast (Google video)

I spoke at the North Carolina Science Blogging Conference (un-conference really) on January 19, 2008. Mainly I reviewed some of my posts on the UsefulChem blog from the past few months to show what types of issues are relevant to doing research openly. I then showed the connection from the blog to the wiki, mailing list and GoogleDocs where the laboratory data get reported and analyzed. Here is the audio (mp3) Screencast (SciVee) Powerpoint Transcript My co-presenter Xan Gregg's talk screencast (SciVee)